{ "version": "Safouan anatomy expansion v25", "created": "2026-10-04", "format": "standard glTF 2.0 GLB; float32 positions/normals; uncompressed geometry; no extension decoder needed", "totalAdditionalGlbBytes": 20209976, "totalAdditionalGlbMiB": 19.27373504638672, "units": "decimeters (1 unit = 10 cm)", "axes": { "x": "patient anatomical left", "y": "superior (head)", "z": "anterior (front)" }, "maleTransform": "(x,z,-y)*0.01 from BodyParts3D source millimeters; matches existing male assets exactly", "femaleTransform": "(10*x,10*y+7.2,10*z+1.5) from HRA source meters after baking source hierarchy; uniform scale and translation, never fitted to male anatomy", "runtimeNote": "Transforms are already baked into vertex coordinates. Do not re-center or independently fit each organ. Both sexes may use same existing runtime scene scale/offset; female has own natural size/posture. Show one sex at a time.", "existingMaleAssets": [ "brain.glb", "heart.glb", "lung-lobes.glb", "bronchi.glb", "trachea.glb", "esophagus.glb", "stomach.glb", "small-intestine.glb", "large-intestine.glb", "liver.glb", "kidneys.glb", "skin.glb", "major-vessels.glb" ], "importantCaveats": [ "All models are adult reference anatomy, not child anatomy.", "Male and female assemblies come from different reference projects/donors and have different system coverage.", "Female source is a complete external body surface plus selected internal structures; it is not a complete female organ/muscle/skeleton atlas.", "Female skeleton: source includes spine, sternum, sacrum/coccyx, ilia, leg bones and associated structures; lacks skull, ribs, upper limbs, feet, and pubis/ischium in this release.", "Female full muscle layer unavailable in this selected official atlas; do not relabel male muscles as female.", "Male nerves file covers cranial/orbital nerves only; a full spinal/peripheral nervous system is not supplied.", "Female stomach not present in this source; do not relabel the male stomach as female.", "Female brain is the separately sourced Allen female reference mirrored/resized within HRA; component license and provenance are preserved.", "Male reproductive model and derivatives retain CC BY-SA 2.1 JP. All other new models use CC BY 4.0." ], "assets": [ { "id": "bladder", "sex": "female", "system": "urinary", "labelEN": "Bladder and associated urinary structures", "filename": "female-bladder.glb", "bytes": 198300, "sha256": "b716b9721ccc8c9dbf01ebbe08588f984c5b58e30a5012c68b62e36af826c28c", "meshCount": 6, "triangles": 10068, "bounds": [ [ -0.40532052516937256, 7.020165551943279, 0.9070136070407127 ], [ 0.1138488994911313, 7.4622671754327765, 1.5241509126499295 ] ], "coverage": "selected_named_source_structures", "provenance": { "source": "https://cdn.humanatlas.io/digital-objects/ref-organ/united-female/v1.10/assets/3d-vh-f-united.glb", "sourceDataset": "Human Reference Atlas / HuBMAP 3D Reference Organ Set for Female v1.10 (2026)", "doi": "https://doi.org/10.48539/HBM637.DWBM.744", "referenceSex": "female", "referenceAge": "adult", "license": "CC BY 4.0", "licenseUrl": "https://creativecommons.org/licenses/by/4.0/", "attribution": "Kristen Browne and Heidi Schlehlein, Human Reference Atlas / HuBMAP, 3D Reference Organ Set for Female v1.10 (2026), CC BY 4.0. Built from the Visible Human Project of the U.S. National Library of Medicine.", "transform": "(x,y,z) source meters -> (10*x,10*y+7.2,10*z+1.5). +X anatomical left, +Y superior, +Z anterior. Placement only, no deformation or fitting to male.", "modifications": [ "selected existing source structures", "source hierarchy transforms baked", "uniform scale meters to decimeters and translation", "quadric-error mesh simplification", "smooth normals recomputed", "source names retained" ], "licenseEvidence": "https://cdn.humanatlas.io/digital-objects/ref-organ/united-female/v1.10/metadata.json", "caveats": [ "Adult reference anatomy, not a child body.", "Separate female source; do not overlay male internal organs as if female-source organs.", "Female skeletal source incomplete; no skull/ribs/arm/foot bones and missing ischium/pubis in this release.", "Female muscle source incomplete; eye/knee only." ], "selectedRoots": [ "VH_F_urinary_bladder" ] }, "parts": [ { "sourceName": "VH_F_fundus_of_urinary_bladder_dome", "organId": "bladder", "sourceNodeIndex": 707 }, { "sourceName": "VH_F_urinary_bladder_neck_smooth_muscle", "organId": "bladder", "sourceNodeIndex": 708 }, { "sourceName": "VH_F_fundus_of_urinary_bladder_base", "organId": "bladder", "sourceNodeIndex": 709 }, { "sourceName": "VH_F_trigone_of_urinary_bladder", "organId": "bladder", "sourceNodeIndex": 710 }, { "sourceName": "VH_F_ureteral_orifice_R", "organId": "ureters", "sourceNodeIndex": 712 }, { "sourceName": "VH_F_ureteral_orifice_L", "organId": "ureters", "sourceNodeIndex": 713 } ] }, { "id": "brain", "sex": "female", "system": "nervous", "labelEN": "Brain \u2014 Allen reference in HRA female assembly", "filename": "female-brain.glb", "bytes": 2399648, "sha256": "1f4125c326798845f2cfc67a34a03274ad2ee8750dc49d39f4a1c4f089a79538", "meshCount": 283, "triangles": 109971, "bounds": [ [ -0.745547097745379, 14.310222578048705, 0.01941654963654964 ], [ 0.6180840368979237, 15.772279404619136, 1.6887659807939084 ] ], "coverage": "selected_named_source_structures", "provenance": { "source": "https://cdn.humanatlas.io/digital-objects/ref-organ/united-female/v1.10/assets/3d-vh-f-united.glb", "sourceDataset": "Human Reference Atlas / HuBMAP 3D Reference Organ Set for Female v1.10 (2026)", "doi": "https://doi.org/10.48539/HBM637.DWBM.744", "referenceSex": "female", "referenceAge": "adult", "license": "CC BY 4.0", "licenseUrl": "https://creativecommons.org/licenses/by/4.0/", "attribution": "Kristen Browne and Heidi Schlehlein, Human Reference Atlas / HuBMAP, 3D Reference Organ Set for Female v1.10 (2026), CC BY 4.0. Built from the Visible Human Project of the U.S. National Library of Medicine.", "transform": "(x,y,z) source meters -> (10*x,10*y+7.2,10*z+1.5). +X anatomical left, +Y superior, +Z anterior. Placement only, no deformation or fitting to male.", "modifications": [ "selected existing source structures", "source hierarchy transforms baked", "uniform scale meters to decimeters and translation", "quadric-error mesh simplification", "smooth normals recomputed", "source names retained" ], "licenseEvidence": "https://cdn.humanatlas.io/digital-objects/ref-organ/united-female/v1.10/metadata.json", "caveats": [ "Adult reference anatomy, not a child body.", "Separate female source; do not overlay male internal organs as if female-source organs.", "Female skeletal source incomplete; no skull/ribs/arm/foot bones and missing ischium/pubis in this release.", "Female muscle source incomplete; eye/knee only." ], "selectedRoots": [ "Allen_brain" ], "componentSource": "Allen Institute human reference atlas; 141 structures from one hemisphere mirrored and resized by HRA to fit the female assembly.", "componentReferenceSex": "female", "componentReferenceAge": 34, "componentLicenseEvidence": "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/metadata.json", "componentAttribution": "Browne, Kristen, and Heidi Schlehlein. 2024. 3D Reference Organ for Brain, Female v1.4. HuBMAP. https://doi.org/10.48539/HBM674.NTLM.353. CC BY 4.0. Based on the Allen Human Brain Reference Atlas; Ding et al. 2016, https://doi.org/10.1002/cne.24080. Mirrored and resized by HRA; geometry adapted for this viewer.", "componentCaveat": "A separate 34-year-old female brain reference, mirrored and resized in the official HRA female assembly; not from the Visible Human female donor." }, "parts": [ { "sourceName": "VH_F_optic_chiasm", "organId": "brain", "sourceNodeIndex": 86 }, { "sourceName": "Allen_olfactory_bulb_L", "organId": "brain", "sourceNodeIndex": 88 }, { "sourceName": "Allen_anterior_olfactory_nucleus_L", "organId": "brain", "sourceNodeIndex": 89 }, { "sourceName": "Allen_piriform_region_L", "organId": "brain", "sourceNodeIndex": 90 }, { "sourceName": "Allen_frontal_agranular_insular_cortex_area_Fl_L", "organId": "brain", "sourceNodeIndex": 91 }, { "sourceName": "Allen_temporal_agranular_insular_cortex_area_Tl_L", "organId": "brain", "sourceNodeIndex": 92 }, { "sourceName": "Allen_head_of_caudate_L", "organId": "brain", "sourceNodeIndex": 93 }, { "sourceName": "Allen_body_of_caudate_L", "organId": "brain", "sourceNodeIndex": 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"organId": "brain", "sourceNodeIndex": 145 }, { "sourceName": "Allen_cerebellar_vermis_L", "organId": "brain", "sourceNodeIndex": 146 }, { "sourceName": "Allen_cerebellar_deep_nuclei_L", "organId": "brain", "sourceNodeIndex": 147 }, { "sourceName": "Allen_white_matter_of_hindbrain_L", "organId": "brain", "sourceNodeIndex": 148 }, { "sourceName": "Allen_olfactory_tract_L", "organId": "brain", "sourceNodeIndex": 149 }, { "sourceName": "Allen_primary_motor_cortex_L", "organId": "brain", "sourceNodeIndex": 150 }, { "sourceName": "Allen_superior_frontal_gyrus_L", "organId": "brain", "sourceNodeIndex": 151 }, { "sourceName": "Allen_middle_frontal_gyrus_L", "organId": "brain", "sourceNodeIndex": 152 }, { "sourceName": "Allen_inferior_frontal_gyrus_triangular_part_L", "organId": "brain", "sourceNodeIndex": 153 }, { "sourceName": "Allen_inferior_frontal_gyrus_opercular_part_L", "organId": "brain", "sourceNodeIndex": 154 }, { "sourceName": "Allen_gyrus_rectus_straight_gyrus_L", "organId": 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